cell ranger single-cell software suit (version 6.0.1 (10X Genomics)
90
Structured Review
10X Genomics
cell ranger single-cell software suit (version 6.0.1
Cell Ranger Single Cell Software Suit (Version 6.0.1, supplied by 10X Genomics, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/cell+ranger+version+6%2E0%2E1/cell+ranger+software/pm39365866-280-38-27
Average 90 stars, based on 1 article reviews
Cell Ranger Single Cell Software Suit (Version 6.0.1, supplied by 10X Genomics, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/cell+ranger+version+6%2E0%2E1/cell+ranger+software/pm39365866-280-38-27
Average 90 stars, based on 1 article reviews
cell ranger single-cell software suit (version 6.0.1 - by Bioz Stars,
2026-10
90/100 stars
Images
Related Articles
Sequencing:Article Title: CD4 + CD8α low T Cell Clonal Expansion Dependent on Costimulation in Patients With Rheumatoid Arthritis Article Snippet: Count matrixes have been created with Article Title: Lymphatics and fibroblasts support intestinal stem cells in homeostasis and injury. Article Snippet: REAGENT or RESOURCE SOURCE IDENTIFIER GraphPad Prism 9 GraphPad Software https://www.graphpad.com/scientific- software/prism/ ImageJ-Fiji National Institutes of Health, USA https://fiji.sc/ R version 3.6.1, version 4.0.2 R Core Team 2021) https://www.r-project.org Salmon version 1.1.0, version 1.3.0 Patro et al. (2017) https://github.com/COMBINE-lab/salmon Tximport version 1.21.1, version 1.16.1 Soneson et al. (2015) https://bioconductor.org/packages/ release/bioc/html/tximport.html DESeq2 Love et al. (2014) https://bioconductor.org/packages/ release/bioc/html/DESeq2.html Tibco Spotfire Analyst 7.6.1 TIBCO https://www.tibco.com/products/tibco- spotfire javaGSEA version 4.1.0 Mootha et al. (2003) https://www.gsea-msigdb.org/gsea/ index.jsp Article Title: A universal MHCII technology platform to characterize antigen-specific CD4 + T cells Article Snippet: Article Title: Lineage and ecology define liver tumor evolution in response to treatment Article Snippet: Article Title: Ezh2 Knockout in B Cells Impairs Plasmablast Differentiation and Ameliorates Lupus-like Disease in MRL/lpr Mice. Article Snippet: Article Title: A universal MHCII technology platform to characterize antigen-specific CD4 + T cells Article Snippet: Article Title: Personalized neoantigen vaccine NEO-PV-01 with chemotherapy and anti-PD-1 as first-line treatment for non-squamous non-small cell lung cancer. Article Snippet: RNA Expression:Article Title: CD4 + CD8α low T Cell Clonal Expansion Dependent on Costimulation in Patients With Rheumatoid Arthritis Article Snippet: Count matrixes have been created with Article Title: Lymphatics and fibroblasts support intestinal stem cells in homeostasis and injury. Article Snippet: REAGENT or RESOURCE SOURCE IDENTIFIER GraphPad Prism 9 GraphPad Software https://www.graphpad.com/scientific- software/prism/ ImageJ-Fiji National Institutes of Health, USA https://fiji.sc/ R version 3.6.1, version 4.0.2 R Core Team 2021) https://www.r-project.org Salmon version 1.1.0, version 1.3.0 Patro et al. (2017) https://github.com/COMBINE-lab/salmon Tximport version 1.21.1, version 1.16.1 Soneson et al. (2015) https://bioconductor.org/packages/ release/bioc/html/tximport.html DESeq2 Love et al. (2014) https://bioconductor.org/packages/ release/bioc/html/DESeq2.html Tibco Spotfire Analyst 7.6.1 TIBCO https://www.tibco.com/products/tibco- spotfire javaGSEA version 4.1.0 Mootha et al. (2003) https://www.gsea-msigdb.org/gsea/ index.jsp Article Title: A universal MHCII technology platform to characterize antigen-specific CD4 + T cells Article Snippet: Article Title: Lineage and ecology define liver tumor evolution in response to treatment Article Snippet: Article Title: Ezh2 Knockout in B Cells Impairs Plasmablast Differentiation and Ameliorates Lupus-like Disease in MRL/lpr Mice. Article Snippet: Article Title: A universal MHCII technology platform to characterize antigen-specific CD4 + T cells Article Snippet: Article Title: Personalized neoantigen vaccine NEO-PV-01 with chemotherapy and anti-PD-1 as first-line treatment for non-squamous non-small cell lung cancer. Article Snippet: Derivative Assay:Article Title: CD4 + CD8α low T Cell Clonal Expansion Dependent on Costimulation in Patients With Rheumatoid Arthritis Article Snippet: Count matrixes have been created with Article Title: Lymphatics and fibroblasts support intestinal stem cells in homeostasis and injury. Article Snippet: REAGENT or RESOURCE SOURCE IDENTIFIER GraphPad Prism 9 GraphPad Software https://www.graphpad.com/scientific- software/prism/ ImageJ-Fiji National Institutes of Health, USA https://fiji.sc/ R version 3.6.1, version 4.0.2 R Core Team 2021) https://www.r-project.org Salmon version 1.1.0, version 1.3.0 Patro et al. (2017) https://github.com/COMBINE-lab/salmon Tximport version 1.21.1, version 1.16.1 Soneson et al. (2015) https://bioconductor.org/packages/ release/bioc/html/tximport.html DESeq2 Love et al. (2014) https://bioconductor.org/packages/ release/bioc/html/DESeq2.html Tibco Spotfire Analyst 7.6.1 TIBCO https://www.tibco.com/products/tibco- spotfire javaGSEA version 4.1.0 Mootha et al. (2003) https://www.gsea-msigdb.org/gsea/ index.jsp Article Title: A universal MHCII technology platform to characterize antigen-specific CD4 + T cells Article Snippet: Article Title: Lineage and ecology define liver tumor evolution in response to treatment Article Snippet: Article Title: Ezh2 Knockout in B Cells Impairs Plasmablast Differentiation and Ameliorates Lupus-like Disease in MRL/lpr Mice. Article Snippet: Article Title: A universal MHCII technology platform to characterize antigen-specific CD4 + T cells Article Snippet: Article Title: Personalized neoantigen vaccine NEO-PV-01 with chemotherapy and anti-PD-1 as first-line treatment for non-squamous non-small cell lung cancer. Article Snippet: Expressing:Article Title: CD4 + CD8α low T Cell Clonal Expansion Dependent on Costimulation in Patients With Rheumatoid Arthritis Article Snippet: Count matrixes have been created with Article Title: Lymphatics and fibroblasts support intestinal stem cells in homeostasis and injury. Article Snippet: REAGENT or RESOURCE SOURCE IDENTIFIER GraphPad Prism 9 GraphPad Software https://www.graphpad.com/scientific- software/prism/ ImageJ-Fiji National Institutes of Health, USA https://fiji.sc/ R version 3.6.1, version 4.0.2 R Core Team 2021) https://www.r-project.org Salmon version 1.1.0, version 1.3.0 Patro et al. (2017) https://github.com/COMBINE-lab/salmon Tximport version 1.21.1, version 1.16.1 Soneson et al. (2015) https://bioconductor.org/packages/ release/bioc/html/tximport.html DESeq2 Love et al. (2014) https://bioconductor.org/packages/ release/bioc/html/DESeq2.html Tibco Spotfire Analyst 7.6.1 TIBCO https://www.tibco.com/products/tibco- spotfire javaGSEA version 4.1.0 Mootha et al. (2003) https://www.gsea-msigdb.org/gsea/ index.jsp Article Title: A universal MHCII technology platform to characterize antigen-specific CD4 + T cells Article Snippet: Article Title: Lineage and ecology define liver tumor evolution in response to treatment Article Snippet: Article Title: Ezh2 Knockout in B Cells Impairs Plasmablast Differentiation and Ameliorates Lupus-like Disease in MRL/lpr Mice. Article Snippet: Article Title: A universal MHCII technology platform to characterize antigen-specific CD4 + T cells Article Snippet: Article Title: Personalized neoantigen vaccine NEO-PV-01 with chemotherapy and anti-PD-1 as first-line treatment for non-squamous non-small cell lung cancer. Article Snippet: Recombinant:Article Title: CD4 + CD8α low T Cell Clonal Expansion Dependent on Costimulation in Patients With Rheumatoid Arthritis Article Snippet: Count matrixes have been created with Article Title: Lymphatics and fibroblasts support intestinal stem cells in homeostasis and injury. Article Snippet: REAGENT or RESOURCE SOURCE IDENTIFIER GraphPad Prism 9 GraphPad Software https://www.graphpad.com/scientific- software/prism/ ImageJ-Fiji National Institutes of Health, USA https://fiji.sc/ R version 3.6.1, version 4.0.2 R Core Team 2021) https://www.r-project.org Salmon version 1.1.0, version 1.3.0 Patro et al. (2017) https://github.com/COMBINE-lab/salmon Tximport version 1.21.1, version 1.16.1 Soneson et al. (2015) https://bioconductor.org/packages/ release/bioc/html/tximport.html DESeq2 Love et al. (2014) https://bioconductor.org/packages/ release/bioc/html/DESeq2.html Tibco Spotfire Analyst 7.6.1 TIBCO https://www.tibco.com/products/tibco- spotfire javaGSEA version 4.1.0 Mootha et al. (2003) https://www.gsea-msigdb.org/gsea/ index.jsp Article Title: A universal MHCII technology platform to characterize antigen-specific CD4 + T cells Article Snippet: Article Title: Lineage and ecology define liver tumor evolution in response to treatment Article Snippet: Article Title: Ezh2 Knockout in B Cells Impairs Plasmablast Differentiation and Ameliorates Lupus-like Disease in MRL/lpr Mice. Article Snippet: Article Title: A universal MHCII technology platform to characterize antigen-specific CD4 + T cells Article Snippet: Article Title: Personalized neoantigen vaccine NEO-PV-01 with chemotherapy and anti-PD-1 as first-line treatment for non-squamous non-small cell lung cancer. Article Snippet: Cell Culture:Article Title: CD4 + CD8α low T Cell Clonal Expansion Dependent on Costimulation in Patients With Rheumatoid Arthritis Article Snippet: Count matrixes have been created with Article Title: Lymphatics and fibroblasts support intestinal stem cells in homeostasis and injury. Article Snippet: REAGENT or RESOURCE SOURCE IDENTIFIER GraphPad Prism 9 GraphPad Software https://www.graphpad.com/scientific- software/prism/ ImageJ-Fiji National Institutes of Health, USA https://fiji.sc/ R version 3.6.1, version 4.0.2 R Core Team 2021) https://www.r-project.org Salmon version 1.1.0, version 1.3.0 Patro et al. (2017) https://github.com/COMBINE-lab/salmon Tximport version 1.21.1, version 1.16.1 Soneson et al. (2015) https://bioconductor.org/packages/ release/bioc/html/tximport.html DESeq2 Love et al. (2014) https://bioconductor.org/packages/ release/bioc/html/DESeq2.html Tibco Spotfire Analyst 7.6.1 TIBCO https://www.tibco.com/products/tibco- spotfire javaGSEA version 4.1.0 Mootha et al. (2003) https://www.gsea-msigdb.org/gsea/ index.jsp Article Title: A universal MHCII technology platform to characterize antigen-specific CD4 + T cells Article Snippet: Article Title: Lineage and ecology define liver tumor evolution in response to treatment Article Snippet: Article Title: Ezh2 Knockout in B Cells Impairs Plasmablast Differentiation and Ameliorates Lupus-like Disease in MRL/lpr Mice. Article Snippet: Article Title: A universal MHCII technology platform to characterize antigen-specific CD4 + T cells Article Snippet: Article Title: Personalized neoantigen vaccine NEO-PV-01 with chemotherapy and anti-PD-1 as first-line treatment for non-squamous non-small cell lung cancer. Article Snippet: Red Blood Cell Lysis:Article Title: CD4 + CD8α low T Cell Clonal Expansion Dependent on Costimulation in Patients With Rheumatoid Arthritis Article Snippet: Count matrixes have been created with Article Title: Lymphatics and fibroblasts support intestinal stem cells in homeostasis and injury. Article Snippet: REAGENT or RESOURCE SOURCE IDENTIFIER GraphPad Prism 9 GraphPad Software https://www.graphpad.com/scientific- software/prism/ ImageJ-Fiji National Institutes of Health, USA https://fiji.sc/ R version 3.6.1, version 4.0.2 R Core Team 2021) https://www.r-project.org Salmon version 1.1.0, version 1.3.0 Patro et al. (2017) https://github.com/COMBINE-lab/salmon Tximport version 1.21.1, version 1.16.1 Soneson et al. (2015) https://bioconductor.org/packages/ release/bioc/html/tximport.html DESeq2 Love et al. (2014) https://bioconductor.org/packages/ release/bioc/html/DESeq2.html Tibco Spotfire Analyst 7.6.1 TIBCO https://www.tibco.com/products/tibco- spotfire javaGSEA version 4.1.0 Mootha et al. (2003) https://www.gsea-msigdb.org/gsea/ index.jsp Article Title: A universal MHCII technology platform to characterize antigen-specific CD4 + T cells Article Snippet: Article Title: Lineage and ecology define liver tumor evolution in response to treatment Article Snippet: Article Title: Ezh2 Knockout in B Cells Impairs Plasmablast Differentiation and Ameliorates Lupus-like Disease in MRL/lpr Mice. Article Snippet: Article Title: A universal MHCII technology platform to characterize antigen-specific CD4 + T cells Article Snippet: Article Title: Personalized neoantigen vaccine NEO-PV-01 with chemotherapy and anti-PD-1 as first-line treatment for non-squamous non-small cell lung cancer. Article Snippet: Multiplex Assay:Article Title: CD4 + CD8α low T Cell Clonal Expansion Dependent on Costimulation in Patients With Rheumatoid Arthritis Article Snippet: Count matrixes have been created with Article Title: Lymphatics and fibroblasts support intestinal stem cells in homeostasis and injury. Article Snippet: REAGENT or RESOURCE SOURCE IDENTIFIER GraphPad Prism 9 GraphPad Software https://www.graphpad.com/scientific- software/prism/ ImageJ-Fiji National Institutes of Health, USA https://fiji.sc/ R version 3.6.1, version 4.0.2 R Core Team 2021) https://www.r-project.org Salmon version 1.1.0, version 1.3.0 Patro et al. (2017) https://github.com/COMBINE-lab/salmon Tximport version 1.21.1, version 1.16.1 Soneson et al. (2015) https://bioconductor.org/packages/ release/bioc/html/tximport.html DESeq2 Love et al. (2014) https://bioconductor.org/packages/ release/bioc/html/DESeq2.html Tibco Spotfire Analyst 7.6.1 TIBCO https://www.tibco.com/products/tibco- spotfire javaGSEA version 4.1.0 Mootha et al. (2003) https://www.gsea-msigdb.org/gsea/ index.jsp Article Title: A universal MHCII technology platform to characterize antigen-specific CD4 + T cells Article Snippet: Article Title: Lineage and ecology define liver tumor evolution in response to treatment Article Snippet: Article Title: Ezh2 Knockout in B Cells Impairs Plasmablast Differentiation and Ameliorates Lupus-like Disease in MRL/lpr Mice. Article Snippet: Article Title: A universal MHCII technology platform to characterize antigen-specific CD4 + T cells Article Snippet: Article Title: Personalized neoantigen vaccine NEO-PV-01 with chemotherapy and anti-PD-1 as first-line treatment for non-squamous non-small cell lung cancer. Article Snippet: Software:Article Title: CD4 + CD8α low T Cell Clonal Expansion Dependent on Costimulation in Patients With Rheumatoid Arthritis Article Snippet: Count matrixes have been created with Article Title: Lymphatics and fibroblasts support intestinal stem cells in homeostasis and injury. Article Snippet: REAGENT or RESOURCE SOURCE IDENTIFIER GraphPad Prism 9 GraphPad Software https://www.graphpad.com/scientific- software/prism/ ImageJ-Fiji National Institutes of Health, USA https://fiji.sc/ R version 3.6.1, version 4.0.2 R Core Team 2021) https://www.r-project.org Salmon version 1.1.0, version 1.3.0 Patro et al. (2017) https://github.com/COMBINE-lab/salmon Tximport version 1.21.1, version 1.16.1 Soneson et al. (2015) https://bioconductor.org/packages/ release/bioc/html/tximport.html DESeq2 Love et al. (2014) https://bioconductor.org/packages/ release/bioc/html/DESeq2.html Tibco Spotfire Analyst 7.6.1 TIBCO https://www.tibco.com/products/tibco- spotfire javaGSEA version 4.1.0 Mootha et al. (2003) https://www.gsea-msigdb.org/gsea/ index.jsp Article Title: A universal MHCII technology platform to characterize antigen-specific CD4 + T cells Article Snippet: Article Title: Lineage and ecology define liver tumor evolution in response to treatment Article Snippet: Article Title: Ezh2 Knockout in B Cells Impairs Plasmablast Differentiation and Ameliorates Lupus-like Disease in MRL/lpr Mice. Article Snippet: Article Title: A universal MHCII technology platform to characterize antigen-specific CD4 + T cells Article Snippet: Article Title: Personalized neoantigen vaccine NEO-PV-01 with chemotherapy and anti-PD-1 as first-line treatment for non-squamous non-small cell lung cancer. Article Snippet: RNA Sequencing:Article Title: CD4 + CD8α low T Cell Clonal Expansion Dependent on Costimulation in Patients With Rheumatoid Arthritis Article Snippet: Count matrixes have been created with Article Title: Lymphatics and fibroblasts support intestinal stem cells in homeostasis and injury. Article Snippet: REAGENT or RESOURCE SOURCE IDENTIFIER GraphPad Prism 9 GraphPad Software https://www.graphpad.com/scientific- software/prism/ ImageJ-Fiji National Institutes of Health, USA https://fiji.sc/ R version 3.6.1, version 4.0.2 R Core Team 2021) https://www.r-project.org Salmon version 1.1.0, version 1.3.0 Patro et al. (2017) https://github.com/COMBINE-lab/salmon Tximport version 1.21.1, version 1.16.1 Soneson et al. (2015) https://bioconductor.org/packages/ release/bioc/html/tximport.html DESeq2 Love et al. (2014) https://bioconductor.org/packages/ release/bioc/html/DESeq2.html Tibco Spotfire Analyst 7.6.1 TIBCO https://www.tibco.com/products/tibco- spotfire javaGSEA version 4.1.0 Mootha et al. (2003) https://www.gsea-msigdb.org/gsea/ index.jsp Article Title: A universal MHCII technology platform to characterize antigen-specific CD4 + T cells Article Snippet: Article Title: Lineage and ecology define liver tumor evolution in response to treatment Article Snippet: Article Title: Ezh2 Knockout in B Cells Impairs Plasmablast Differentiation and Ameliorates Lupus-like Disease in MRL/lpr Mice. Article Snippet: Article Title: A universal MHCII technology platform to characterize antigen-specific CD4 + T cells Article Snippet: Article Title: Personalized neoantigen vaccine NEO-PV-01 with chemotherapy and anti-PD-1 as first-line treatment for non-squamous non-small cell lung cancer. Article Snippet: In Situ Hybridization:Article Title: CD4 + CD8α low T Cell Clonal Expansion Dependent on Costimulation in Patients With Rheumatoid Arthritis Article Snippet: Count matrixes have been created with Article Title: Lymphatics and fibroblasts support intestinal stem cells in homeostasis and injury. Article Snippet: REAGENT or RESOURCE SOURCE IDENTIFIER GraphPad Prism 9 GraphPad Software https://www.graphpad.com/scientific- software/prism/ ImageJ-Fiji National Institutes of Health, USA https://fiji.sc/ R version 3.6.1, version 4.0.2 R Core Team 2021) https://www.r-project.org Salmon version 1.1.0, version 1.3.0 Patro et al. (2017) https://github.com/COMBINE-lab/salmon Tximport version 1.21.1, version 1.16.1 Soneson et al. (2015) https://bioconductor.org/packages/ release/bioc/html/tximport.html DESeq2 Love et al. (2014) https://bioconductor.org/packages/ release/bioc/html/DESeq2.html Tibco Spotfire Analyst 7.6.1 TIBCO https://www.tibco.com/products/tibco- spotfire javaGSEA version 4.1.0 Mootha et al. (2003) https://www.gsea-msigdb.org/gsea/ index.jsp Article Title: A universal MHCII technology platform to characterize antigen-specific CD4 + T cells Article Snippet: Article Title: Lineage and ecology define liver tumor evolution in response to treatment Article Snippet: Article Title: Ezh2 Knockout in B Cells Impairs Plasmablast Differentiation and Ameliorates Lupus-like Disease in MRL/lpr Mice. Article Snippet: Article Title: A universal MHCII technology platform to characterize antigen-specific CD4 + T cells Article Snippet: Article Title: Personalized neoantigen vaccine NEO-PV-01 with chemotherapy and anti-PD-1 as first-line treatment for non-squamous non-small cell lung cancer. Article Snippet: |
